#NEXUS

BEGIN TREES;

Tree g1 = ((((a1::.5,b1::.5)::.5,c::.5)::.5,d::.5)::.5,e::.5)::.5;
Tree g2 = ((a2::.5,b2::.5)::.5,((c::.5,e::.5)::.5,d::.5)::.5)::.5;
Tree g3 = ((a::.5,c::.5)::.5,((b::.5,e::.5)::.5,d::.5)::.5)::.5;

END;


BEGIN PHYLONET;

Infer_ST_MDC_UR (g1, g2, g3) -b .5 -e .2 -x -ur -t 1 -a <z:a1,a2,a; y:b1,b2,b; c:c; d:d; e:e>;

END;
===

Infer_ST_MDC_UR (g1, g2, g3) -b .5 -e .2 -x -ur -t 1 -a <z:a1,a2,a; y:b1,b2,b; c:c; d:d; e:e>
(e,(d,(c,(y,z)))); 3.0 extra lineages in total
(d,(e,(c,(y,z)))); 3.0 extra lineages in total
(c,((d,e),(y,z))); 3.0 extra lineages in total
(d,((e,c),(y,z))); 3.0 extra lineages in total
===
